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× the national human genome research institute mod el organism enc yclopedia o f d na e lements about documentation contact us project wiki contact us latest news -- “ the project will try to identify all of the sequence-based functional elements in the caenorhabditis elegans and drosophila melanogaster genomes. ” “ the national human genome research institute (nhgri) model organism encyclopedia of dna elements () project will try to identify all of the sequence-based functional elements in the caenorhabditis elegans and drosophila melanogaster genomes. ” -- modmine history 32 release # 33 explore a hierarchical view of regulatory networks for fly and worm. upload your genomic regions and search for features found by the project. upload your list of fly genes and view an expression score heatmap . networks view fly regulatory network view worm regulatory network regions maps instance amazon the entire data set available for analysis in the amazon compute cloud. dataset find, view and download datasets in bulk. ftp download released data using the traditional ftp interface. choose an organism below to see gbrowse, dataset search links: oicr gbrowse c. elegans c. brenneri c. briggsae c. japonica c. remanei d. melanogaster d. ananassae d. mojavensis d. pseudoobscura d. simulans d. virilis d. yakuba browse projects chromatin structure copy number variation gene structure genome sequence histone modification and replacement metadata only other chromatin binding sites rna expression profiling replication tf binding sites gene model d. melanogaster c. elegans histone variants genome-wide chromatin profiling in drosophila pi: steven henikoff labs: kamran ahmad submissions: 7 experimental factors: biochemical fraction, cell line, extraction time, sodium chloride concentration gbrowse tracks: 2 histone variants genome-wide chromatin profiling pi: steven henikoff labs: kamran ahmad, steven henikoff submissions: 32 experimental factors: developmental stage, biochemical fraction, cell line, extraction time, sodium chloride concentration gbrowse tracks: 32 filter by pi: show all jason lieb steven henikoff chromatin function nucleosome mapping pi: jason lieb labs: jason lieb submissions: 3 experimental factors: developmental stage, strain, temperature gbrowse tracks: 3 histone variants genome wide chromatin profiling in c. elegans pi: steven henikoff labs: steven henikoff submissions: 8 experimental factors: developmental stage, biochemical fraction, extraction time, sodium chloride concentration, strain gbrowse tracks: 8 d. melanogaster origins of replication cgh drosophila cell lines pi: david macalpine labs: david macalpine submissions: 1 experimental factors: cell line gbrowse tracks: 1 origins of replication cnv in drosophila cell lines pi: david macalpine labs: david macalpine submissions: 7 experimental factors: cell line gbrowse tracks: 7 origins of replication differential replication of polytene chromosomes pi: david macalpine labs: terry orr-weaver submissions: 7 experimental factors: developmental stage, strain, tissue features: copynumbervariation: 149 gbrowse tracks: 7 d. melanogaster c. elegans the drosophila transcriptome rt-pcr pi: sue celniker labs: michael brent submissions: 5 experimental factors: cell line features: cdnamatch: 2352 , mrna: 1691 , est: 2352 gbrowse tracks: 9 the drosophila transcriptome analysis of tss using stranded race products pi: sue celniker labs: sue celniker submissions: 1 experimental factors: developmental stage, strain gbrowse tracks: 1 the drosophila transcriptome annotation of the developmental transcriptome of drosophila melanogaster pi: sue celniker labs: brian oliver, sue celniker submissions: 2 features: snorna: 39 , cdnamatch: 1457 , exon: 251915 , gene: 16857 , mrna: 39418 , transcript: 4160 , stopcodon: 39433 , fiveprimeutr: 60196 , startcodon: 39559 , threeprimeutr: 37615 gbrowse tracks: 3 the drosophila transcriptome validation of drosophila transcripts by full-length cdna screening and sequencing pi: sue celniker labs: sue celniker submissions: 6 experimental factors: developmental stage, cdna library, strain features: cdnamatch: 8839 gbrowse tracks: 6 the drosophila transcriptome cap analysis of gene expression pi: sue celniker labs: sue celniker submissions: 43 experimental factors: developmental stage, cell line, strain, tissue gbrowse tracks: 40 the drosophila transcriptome 5' race pi: sue celniker labs: sue celniker submissions: 8 experimental factors: developmental stage, strain features: pseudogene: 2 , mrna: 5604 , ncrna: 2 , est: 1730720 gbrowse tracks: 2 the drosophila transcriptome annotation of drosophila splice junctions by rna-seq pi: sue celniker labs: brenton graveley submissions: 30 features: exonregion: 3005431 , intron: 1745570 , transcriptregion: 1745570 gbrowse tracks: 1 the drosophila transcriptome drosophila cell line and developmental stage gene and exon scores pi: sue celniker labs: peter cherbas submissions: 1 experimental factors: developmental stage, cell line, strain filter by pi: show all fabio piano robert waterston the 3' utrome encyclopedia of c. elegans 3'utrs and their regulatory elements pi: fabio piano labs: fabio piano, john kim submissions: 41 experimental factors: developmental stage, strain, temperature, tissue features: exon: 21355 , gene: 20220 , mrna: 3720 , polyasignalsequence: 27135 , transcript: 27417 , threeprimeraceclone: 2700 , polyasite: 35382 , est: 2694 , threeprimerst: 2700 , threeprimeust: 2700 , threeprimeutr: 24055 gbrowse tracks: 60 the c. elegans transcriptome sl acceptor site confirmation in c. elegans pi: robert waterston labs: phil green submissions: 2 experimental factors: developmental stage, strain features: primer: 2 , sl7acceptorsite: 1 , sl1acceptorsite: 987 , transcriptregion: 1533 , est: 1483 , sl2acceptorsite: 46 , sl4acceptorsite: 1 , splicedleaderrna: 13 gbrowse tracks: 7 the c. elegans transcriptome intron confirmation in c. elegans pi: robert waterston labs: phil green submissions: 6 experimental factors: developmental stage, strain features: intron: 10284 , est: 6855 gbrowse tracks: 24 the c. elegans transcriptome mass spectrometric validation of short orfs pi: robert waterston labs: michael maccoss submissions: 1 experimental factors: developmental stage, strain, temperature features: intron: 8077 , maturetranscript: 11189 , polypeptideregion: 65805 gbrowse tracks: 1 the c. elegans transcriptome genelet gap closing pi: robert waterston labs: phil green submissions: 1 experimental factors: developmental stage, strain features: intron: 3241 , est: 2973 gbrowse tracks: 4 the c. elegans transcriptome identification of small rnas in c. elegans pi: robert waterston labs: frank slack submissions: 23 experimental factors: developmental stage, days post-l4, strain, temperature features: mirna: 8464 gbrowse tracks: 23 the c. elegans transcriptome transcription start site confirmation in c. elegans pi: robert waterston labs: phil green submissions: 1 experimental factors: developmental stage, strain features: tss: 1221 , primer: 1 , transcriptregion: 3914 , est: 1239 gbrowse tracks: 2 d. melanogaster the drosophila transcriptome genomic assembly of d. melanogaster strains and cell lines pi: sue celniker labs: brenton graveley submissions: 17 experimental factors: developmental stage, cell line, strain gbrowse tracks: 17 the drosophila transcriptome genomic sequencing of d. melanogaster strains and cell lines pi: sue celniker labs: brenton graveley submissions: 17 experimental factors: developmental stage, cell line, strain d. melanogaster c. elegans filter by pi: show all gary karpen kevin white chromosomal proteins genomic distributions of histone modifications in d. melanogaster by chip-seq pi: gary karpen labs: gary karpen, mitzi kuroda, sarah elgin submissions: 78 experimental factors: developmental stage, antibody, cell line, strain, tissue features: bindingsite: 1728322 , depletedregion: 2 gbrowse tracks: 78 chromosomal p

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Domain Name: MODENCODE.ORG
Registry Domain ID: D143473454-LROR
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Registry Registrant ID: C2418898-LROR
Registrant Name: Cherry Lab, Stanford Univ
Registrant Organization: Cherry Lab, Stanford Univ
Registrant Street: Dept Genetics, Stanford University
Registrant City: Stanford
Registrant State/Province: CA
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  ARGS modencode.org

  PORT 43

  TYPE domain

DOMAIN

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  HANDLE D143473454-LROR

  CREATED 2007-12-04

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OWNER

  HANDLE C2418898-LROR

  NAME Cherry Lab, Stanford Univ

  ORGANIZATION Cherry Lab, Stanford Univ

ADDRESS

STREET
Dept Genetics, Stanford University

  CITY Stanford

  STATE CA

  PCODE 94305-5120

  COUNTRY US

  PHONE +1.6507237541

  EMAIL [email protected]

ADMIN

  HANDLE C2418898-LROR

  NAME Cherry Lab, Stanford Univ

  ORGANIZATION Cherry Lab, Stanford Univ

ADDRESS

STREET
Dept Genetics, Stanford University

  CITY Stanford

  STATE CA

  PCODE 94305-5120

  COUNTRY US

  PHONE +1.6507237541

  EMAIL [email protected]

TECH

  HANDLE C2418898-LROR

  NAME Cherry Lab, Stanford Univ

  ORGANIZATION Cherry Lab, Stanford Univ

ADDRESS

STREET
Dept Genetics, Stanford University

  CITY Stanford

  STATE CA

  PCODE 94305-5120

  COUNTRY US

  PHONE +1.6507237541

  EMAIL [email protected]

  REGISTERED yes

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